Structure of PDB 4d0y Chain B Binding Site BS04

Receptor Information
>4d0y Chain B (length=184) Species: 373153 (Streptococcus pneumoniae D39) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKA
MQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQ
TGLAFDVIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAE
EWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain4d0y Chain B Residue 1245 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4d0y Structure of the Pneumococcal L,D-Carboxypeptidase Dacb and Pathophysiological Effects of Disabled Cell Wall Hydrolases Daca and Dacb.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		E90 K95 Y116
Binding residue
(residue number reindexed from 1)		E36 K41 Y62
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.17.13: muramoyltetrapeptide carboxypeptidase.
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:4d0y, PDBe:4d0y, PDBj:4d0y
PDBsum4d0y
PubMed25060741
UniProtA0A0H2ZP28

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