Structure of PDB 2hdu Chain B Binding Site BS04

Receptor Information
>2hdu Chain B (length=358) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQP
VTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNG
ITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANS
SIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGY
REGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDINEKTLQQGIQ
LAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITP
PTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYPNPARVDAA
WQILNALQ
Ligand information
Ligand IDF12
InChIInChI=1S/C7H7NO3S/c1-4(9)8-6-5(7(10)11)2-3-12-6/h2-3H,1H3,(H,8,9)(H,10,11)
InChIKeyRCEBHKDQZCVBTC-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)c1c(scc1)NC(=O)C
CACTVS 3.341CC(=O)Nc1sccc1C(O)=O
OpenEye OEToolkits 1.5.0CC(=O)Nc1c(ccs1)C(=O)O
FormulaC7 H7 N O3 S
Name2-(ACETYLAMINO)THIOPHENE-3-CARBOXYLIC ACID
ChEMBLCHEMBL1213612
DrugBank
ZINCZINC000001389744
PDB chain2hdu Chain B Residue 1005 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2hdu Deconstructing fragment-based inhibitor discovery
Resolution1.49 Å
Binding residue
(original residue number in PDB)		N285 G286 I291 R296
Binding residue
(residue number reindexed from 1)		N282 G283 I288 R293
Annotation score1
Binding affinityMOAD: Ki=5mM
BindingDB: Ki=5000000nM
Enzymatic activity
Catalytic site (original residue number in PDB) S64 K67 Y112 A114 V121 Y150 G156 E272 K315 A318
Catalytic site (residue number reindexed from 1) S61 K64 Y109 A111 V118 Y147 G153 E269 K312 A315
Enzyme Commision number 3.5.2.6: beta-lactamase.
Gene Ontology
Molecular Function
GO:0008800 beta-lactamase activity
GO:0016787 hydrolase activity
Biological Process
GO:0017001 antibiotic catabolic process
GO:0046677 response to antibiotic
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2hdu, PDBe:2hdu, PDBj:2hdu
PDBsum2hdu
PubMed17072304
UniProtP00811|AMPC_ECOLI Beta-lactamase (Gene Name=ampC)

[Back to BioLiP]