Structure of PDB 2gpy Chain B Binding Site BS04

Receptor Information

>2gpy Chain B (length=192) Species: 272558 (Halalkalibacterium halodurans C-125) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LKHYLEKQIPARDQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPAR
ILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRI
ELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLIL
SDNVLFNQWLLEHPQYDTRIFPVGDGIAISIKREEGHHHHHH

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

2gpy Chain B Residue 310 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	2gpy Crystal structure of putative O-methyltransferase from Bacillus halodurans
Resolution	1.9 Å
Binding residue (original residue number in PDB)	H48 K51
Binding residue (residue number reindexed from 1)	H41 K44
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	D133 K136 D159 N160
Catalytic site (residue number reindexed from 1)	D126 K129 D152 N153
Enzyme Commision number	2.1.1.-

Gene Ontology

	Molecular Function
GO:0000287	magnesium ion binding
GO:0008168	methyltransferase activity
GO:0008171	O-methyltransferase activity
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity
GO:0016300	tRNA (uridine) methyltransferase activity
GO:0046872	metal ion binding

	Biological Process
GO:0008033	tRNA processing
GO:0030488	tRNA methylation
GO:0032259	methylation

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Molecular Function

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Biological Process

External links

PDB	RCSB:2gpy, PDBe:2gpy, PDBj:2gpy
PDBsum	2gpy
PubMed
UniProt	Q9KDE1

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