Structure of PDB 1umz Chain B Binding Site BS04

Receptor Information
>1umz Chain B (length=264) Species: 113636 (Populus tremula) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSM
QMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTG
GKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLG
VKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCE
ASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSR
YPSMPPECKRDRDI
Ligand information
Ligand IDXYS
InChIInChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5+/m1/s1
InChIKeySRBFZHDQGSBBOR-LECHCGJUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)O)O)O)O
CACTVS 3.341O[CH]1CO[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O
CACTVS 3.341O[C@@H]1CO[C@H](O)[C@H](O)[C@H]1O
ACDLabs 10.04OC1C(O)COC(O)C1O
FormulaC5 H10 O5
Namealpha-D-xylopyranose;
alpha-D-xylose;
D-xylose;
xylose;
XYLOPYRANOSE
ChEMBL
DrugBankDB03389
ZINCZINC000001529214
PDB chain1umz Chain F Residue 5 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1umz Crystal Structures of a Poplar Xyloglucan Endotransglycosylase Reveal Details of Transglycosylation Acceptor Binding
Resolution1.8 Å
Binding residue
(original residue number in PDB)		E114 Y250
Binding residue
(residue number reindexed from 1)		E106 Y242
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) E85 D87 E89
Catalytic site (residue number reindexed from 1) E77 D79 E81
Enzyme Commision number 2.4.1.207: xyloglucan:xyloglucosyl transferase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016757 glycosyltransferase activity
GO:0016762 xyloglucan:xyloglucosyl transferase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030247 polysaccharide binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0010411 xyloglucan metabolic process
GO:0042546 cell wall biogenesis
GO:0044042 glucan metabolic process
GO:0071555 cell wall organization
Cellular Component
GO:0005618 cell wall
GO:0005737 cytoplasm
GO:0048046 apoplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1umz, PDBe:1umz, PDBj:1umz
PDBsum1umz
PubMed15020748
UniProtQ8GZD5|XTH34_POPPZ Xyloglucan endotransglucosylase protein 34 (Gene Name=XTH16-34)

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