Structure of PDB 1s0m Chain B Binding Site BS04

Receptor Information

>1s0m Chain B (length=341) Species: 273057 (Saccharolobus solfataricus P2)

MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEA
RKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIE
IASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVF
AKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGIN
KLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVT
MKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGR
TFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI

Ligand information

>1s0m Chain F (length=16)

ataaatccttccccca

Receptor-Ligand Complex Structure

Structure summary

• PDB: 1s0m Crystal structure of a benzo[a]pyrene diol epoxide adduct in a ternary complex with a DNA polymerase.
• Resolution: 2.7 Å
• Binding residue (original residue number in PDB): V32 S34 G41 A42 A220 R242 K243 S244 I245 G246 R247 I248 T250 L293 R332 R336
• Binding residue (residue number reindexed from 1): V32 S34 G41 A42 A220 R242 K243 S244 I245 G246 R247 I248 T250 L293 R332 R336

Enzymatic activity

• Enzyme Commision number: 2.7.7.7: DNA-directed DNA polymerase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0003677 DNA binding
• GO:0003684 damaged DNA binding
• GO:0003887 DNA-directed DNA polymerase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006260 DNA replication
• GO:0006261 DNA-templated DNA replication
• GO:0006281 DNA repair
• GO:0006974 DNA damage response
• GO:0042276 error-prone translesion synthesis

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:1s0m, PDBe:1s0m, PDBj:1s0m
• PDBsum: 1s0m
• PubMed: 14982998
• UniProt: Q97W02|DPO4_SACS2 DNA polymerase IV (Gene Name=dbh)