Structure of PDB 1p4r Chain B Binding Site BS04
Receptor Information
>1p4r Chain B (length=588) Species:
9606
(Homo sapiens) [
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QLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSEL
TGFPEMLGGRVKTLHPAVHAGILARNIPEDNADMARLDFNLIRVVACNLY
PFVKTVASPGVTVEEAVEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVV
STEMQSSESKDTSLETRRQLALKAFTHTAQYDEAISDYFRKQYSKGVSQM
PLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDALNAWQLVKELK
EALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAYA
RARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEEEALTIL
SKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNVV
TKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHC
TRLAGDKANYWWLRHHPQVLSMKFKTGVKRAEISNAIDQYVTGTIGEDED
LIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDAFFPFRDNVDRAKRS
GVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH
Ligand information
Ligand ID
354
InChI
InChI=1S/C20H23N5O8S/c21-20-23-14-6-5-12(9-13(14)18(29)24-20)34(32,33)25-11-3-1-10(2-4-11)17(28)22-15(19(30)31)7-8-16(26)27/h1-6,9,15,17,22,25,28,32-33H,7-8H2,(H,26,27)(H,30,31)(H3,21,23,24,29)/t15-,17?/m0/s1
InChIKey
JWYUKMCUDBSRPA-MYJWUSKBSA-N
SMILES
Software
SMILES
ACDLabs 10.04
O=C(O)C(NC(O)c1ccc(cc1)NS(O)(O)c3cc2c(nc(nc2O)N)cc3)CCC(=O)O
OpenEye OEToolkits 1.5.0
c1cc(ccc1C(N[C@@H](CCC(=O)O)C(=O)O)O)NS(c2ccc3c(c2)c(nc(n3)N)O)(O)O
CACTVS 3.341
Nc1nc(O)c2cc(ccc2n1)[S](O)(O)Nc3ccc(cc3)[C@H](O)N[C@@H](CCC(O)=O)C(O)=O
OpenEye OEToolkits 1.5.0
c1cc(ccc1C(NC(CCC(=O)O)C(=O)O)O)NS(c2ccc3c(c2)c(nc(n3)N)O)(O)O
CACTVS 3.341
Nc1nc(O)c2cc(ccc2n1)[S](O)(O)Nc3ccc(cc3)[CH](O)N[CH](CCC(O)=O)C(O)=O
Formula
C20 H23 N5 O8 S
Name
N-[(S)-(4-{[(2-AMINO-4-HYDROXYQUINAZOLIN-6-YL)(DIHYDROXY)-LAMBDA~4~-SULFANYL]AMINO}PHENYL)(HYDROXY)METHYL]-L-GLUTAMIC ACID
ChEMBL
DrugBank
ZINC
PDB chain
1p4r Chain B Residue 1802 [
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Receptor-Ligand Complex Structure
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PDB
1p4r
Crystal structures of human bifunctional enzyme aminoimidazole-4-carboxamide ribonucleotide transformylase/IMP cyclohydrolase in complex with potent sulfonyl-containing antifolates
Resolution
2.55 Å
Binding residue
(original residue number in PDB)
Q449 S450 R451 I452 P543 F544 D546 N547 S565 A566
Binding residue
(residue number reindexed from 1)
Q445 S446 R447 I448 P539 F540 D542 N543 S561 A562
Annotation score
1
Binding affinity
PDBbind-CN
: -logKd/Ki=8.10,Ki=8nM
Enzymatic activity
Catalytic site (original residue number in PDB)
K266 H267 N431 H592
Catalytic site (residue number reindexed from 1)
K262 H263 N427 H588
Enzyme Commision number
2.1.2.3
: phosphoribosylaminoimidazolecarboxamide formyltransferase.
3.5.4.10
: IMP cyclohydrolase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0003937
IMP cyclohydrolase activity
GO:0004643
phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0016740
transferase activity
GO:0016787
hydrolase activity
GO:0042803
protein homodimerization activity
GO:0045296
cadherin binding
Biological Process
GO:0003360
brainstem development
GO:0006139
nucleobase-containing compound metabolic process
GO:0006164
purine nucleotide biosynthetic process
GO:0006177
GMP biosynthetic process
GO:0006189
'de novo' IMP biosynthetic process
GO:0021549
cerebellum development
GO:0021987
cerebral cortex development
GO:0031100
animal organ regeneration
GO:0044208
'de novo' AMP biosynthetic process
GO:0046452
dihydrofolate metabolic process
GO:0046654
tetrahydrofolate biosynthetic process
GO:0097294
'de novo' XMP biosynthetic process
GO:0098761
cellular response to interleukin-7
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005886
plasma membrane
GO:0016020
membrane
GO:0070062
extracellular exosome
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1p4r
,
PDBe:1p4r
,
PDBj:1p4r
PDBsum
1p4r
PubMed
14966129
UniProt
P31939
|PUR9_HUMAN Bifunctional purine biosynthesis protein ATIC (Gene Name=ATIC)
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