Structure of PDB 1hv5 Chain B Binding Site BS04
Receptor Information
>1hv5 Chain B (length=164) Species:
10090
(Mus musculus) [
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MFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFT
EVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYD
ETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLS
PDDRRGIQHLYGRP
Ligand information
Ligand ID
RXP
InChI
InChI=1S/C39H43N4O6P/c40-37(44)35(24-32-25-41-34-22-11-10-21-33(32)34)42-38(45)31(20-12-19-28-13-4-1-5-14-28)27-50(47,48)36(23-29-15-6-2-7-16-29)43-39(46)49-26-30-17-8-3-9-18-30/h1-11,13-18,21-22,25,31,35-36,41H,12,19-20,23-24,26-27H2,(H2,40,44)(H,42,45)(H,43,46)(H,47,48)/t31-,35+,36+/m1/s1
InChIKey
YQEMFOGNUTYMTJ-JNBVYXHXSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1ccc(cc1)CCCC(CP(=O)(C(Cc2ccccc2)NC(=O)OCc3ccccc3)O)C(=O)NC(Cc4c[nH]c5c4cccc5)C(=O)N
OpenEye OEToolkits 1.5.0
c1ccc(cc1)CCC[C@H](C[P@@](=O)([C@@H](Cc2ccccc2)NC(=O)OCc3ccccc3)O)C(=O)N[C@@H](Cc4c[nH]c5c4cccc5)C(=O)N
CACTVS 3.341
NC(=O)[CH](Cc1c[nH]c2ccccc12)NC(=O)[CH](CCCc3ccccc3)C[P](O)(=O)[CH](Cc4ccccc4)NC(=O)OCc5ccccc5
ACDLabs 10.04
O=C(OCc1ccccc1)NC(Cc2ccccc2)P(=O)(O)CC(C(=O)NC(C(=O)N)Cc4c3ccccc3nc4)CCCc5ccccc5
CACTVS 3.341
NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CCCc3ccccc3)C[P@@](O)(=O)[C@@H](Cc4ccccc4)NC(=O)OCc5ccccc5
Formula
C39 H43 N4 O6 P
Name
1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID
ChEMBL
DrugBank
DB04318
ZINC
ZINC000026576087
PDB chain
1hv5 Chain B Residue 6002 [
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Receptor-Ligand Complex Structure
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PDB
1hv5
Crystal structure of the stromelysin-3 (MMP-11) catalytic domain complexed with a phosphinic inhibitor mimicking the transition-state.
Resolution
2.6 Å
Binding residue
(original residue number in PDB)
L172 G179 I180 L181 A182 A184 Q215 H219 E220 H223 F240 Y241
Binding residue
(residue number reindexed from 1)
L72 G79 I80 L81 A82 A84 Q115 H119 E120 H123 F140 Y141
Annotation score
1
Binding affinity
BindingDB: Ki=5nM
Enzymatic activity
Catalytic site (original residue number in PDB)
H219 E220 H223 H229
Catalytic site (residue number reindexed from 1)
H119 E120 H123 H129
Enzyme Commision number
3.4.24.-
Gene Ontology
Molecular Function
GO:0004222
metalloendopeptidase activity
GO:0008237
metallopeptidase activity
GO:0008270
zinc ion binding
Biological Process
GO:0006508
proteolysis
Cellular Component
GO:0031012
extracellular matrix
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1hv5
,
PDBe:1hv5
,
PDBj:1hv5
PDBsum
1hv5
PubMed
11254383
UniProt
Q02853
|MMP11_MOUSE Stromelysin-3 (Gene Name=Mmp11)
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