Structure of PDB 8apo Chain Aq Binding Site BS04

Receptor Information

>8apo Chain Aq (length=188) Species: 353565 (Polytomella magna)

SRPPLYARSGKFRESEEVQPYRTWYWYDAETESEERRKELRQQLYRDSGM
SYYLNIPQSMKKLERVVRVIRNLAYDEAWKQACVLPLKAAGFVKEGLEHA
RKDAEEKGLDPKKLVVSTVYTAKGKYLRGFQPMGKGFAGRKTTRKTHLRI
VLRENASVLPFAAQVVSPSRVGGASQKHLRDISVRYTV

Ligand information

>8apo Chain A7 (length=534)

aaucguaccgcaaaccaacacagguuaguuauuguaaaggcuguauaaaa
ccaggauaaaggaacucggcaaaauagguuauguuuucguacaaaaccac
aacaaaaguagugacuguuuaccaaaaacacaagacucugcuaacacuua
uaguggaaguauagugucugauaccugcccaaaggcaaagcaaacggcag
cuguaacucuaacggcucuaagguagcaaaauuccauggcauuuaaauga
ugucccgcaugaaugguauaacaacuucuuaacugucucuauucuggauu
aggcgaacuuuaaaugcuugugcagaugcaggcuagcuaacaagggacga
agagacccuaugcagcuuuagggcagguuauuauucaauaaacuaccuuu
uuucugggacggacgcucuuauuaaagaaacaagagugagcaaugguuuu
uacuaauuauaaaaaagaaaagcuuaacugcaauacaaacaauuaaagca
ggggcauugucggcaauaaugcauugaagaaaua

..............<<......>>...................<<.<...
<<<<<<<<.<<.........<.....<<<<.<<<......>>>.>>>>..
.....<<<.<<<<..<<<.........>>>..<<<<.<<.....<<<...
..>>>.......>>.>>>>.<<<<<.<<<.....<<...>>....>>><<
<<<<.......>>>>>>........<...........<<<<<<.....>>
>>>>.....>....>>>>>..>>.>>.>>>...>..>>.>>>>>>>>.>>
>..............<<<<<........>>>>>.................
...................<<<<..<<<<<<<....>>>>.>>>.>>>>.
..<<<.....>>>.<<<<<<...........>>>>>>..<<...<<<<<<
..<.....((......>.>>>>>>...<<<<..<<........>>..>>>
>.<<<...>>>.>>.)).................

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8apo Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites
• Resolution: 3.2 Å
• Binding residue (original residue number in PDB): Q125 K129 K155 Q198 P199 M200 G203 F204 R207 K208 T209
• Binding residue (residue number reindexed from 1): Q58 K62 K88 Q131 P132 M133 G136 F137 R140 K141 T142

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 22:25:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8apo', asym_id = 'Aq', bs = 'BS04', title = 'Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8apo', asym_id='Aq', bs='BS04', title='Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412,0015934', uniprot = '', pdbid = '8apo', asym_id = 'Aq'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015934', uniprot='', pdbid='8apo', asym_id='Aq')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>