Structure of PDB 9ex2 Chain A Binding Site BS04

Receptor Information
>9ex2 Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDA1H8D
InChIInChI=1S/33O.15V/q21*-2;12*-1;15*+4
InChIKeyDLKKHOPCDYTIQY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[O-]=[V+4]123[O-2][V+4]45[O-2]6[V+4]78[O-2]4[V+4]94(=[O-])[O-2]7[V+4]7%10(=[O-])[O-2]8[V+4]8%11(=[O-])[O-2]7[V+4]7%12(=[O-])[O-2]8[V+4]8%13(=[O-])[O-2]%11[V+4]66(=[O-])[O-2]5[V+4]5(=[O-])([O-2]68)[O-2]1[V+4]16(=[O-])[O-2]5[V+4]5([O-2]%13)[O-2]1[V+4]1(=[O-])([O-2]57)[O-2]%12[V+4]5(=[O-])([O-2]%10)[O-2]9[V+4](=[O-])([O-2]42)([O-2]36)[O-2]51
CACTVS 3.385[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O--]1[V+4][O--][V+4]1[O--][V+4]2[O--][V+4]3[O--][V+4][O--][V+4]4[O--][V+4]([O--]4)[O--][V+4]([O--]3)[O--][V+4]5[O--][V+4][O--][V+4]67[O--][V+4]([O--][V+4][O--][V+4]([O--][V+4]([O--]5)[O--]6)[O--]7)[O--]2
FormulaO33 V15
NamePolyoxidovanadate complex
ChEMBL
DrugBank
ZINC
PDB chain9ex2 Chain A Residue 204 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB9ex2 Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Resolution1.172 Å
Binding residue
(original residue number in PDB)
K13 D18 S24 L25 Q121 I124 L129
Binding residue
(residue number reindexed from 1)
K13 D18 S24 L25 Q121 I124 L129
Annotation score1
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:9ex2, PDBe:9ex2, PDBj:9ex2
PDBsum9ex2
PubMed38842919
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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