Structure of PDB 8yfq Chain A Binding Site BS04

Receptor Information
>8yfq Chain A (length=1398) Species: 460519 (Komagataella phaffii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREG
GLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKK
VCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEAD
SRGGCGNTQPVVRKDGMKLWGTWKKQPERKLLTPGEILNVFKHISPEDCF
RLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDIL
KANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGR
PVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISI
AKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKR
AGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL
NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPV
MGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKP
LWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKK
TVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAI
ADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSR
TLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMV
EGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAG
REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGE
DGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIKPDVIEYAADIL
GDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQ
IFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQ
CLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAA
QSIGEPATQMNVTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAK
VIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSPWLLRLE
LDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIRDE
EDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWA
LETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNV
IAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEET
VEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMIDEKLLTSL
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8yfq Chain A Residue 1801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8yfq Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		C67 C70 C77 H80
Binding residue
(residue number reindexed from 1)		C66 C69 C76 H79
Annotation score1
External links