Structure of PDB 8wg3 Chain A Binding Site BS04

Receptor Information
>8wg3 Chain A (length=548) Species: 6100,10090 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DYCYSARIRSTVLQGLPFGGVPTVLALDFMCFLALLFLFSILRKVAWNGF
CSWLTAIFRIKDDEIRDKCGGDAVHYLSFQRHIIGLLVVVGVLSVGIVLP
VNFSGDLLENNAYSFGRTTIANLKSGNNLLWLHTSFAFLYLLLTVYSMRR
HTSKMRVKRTLFINGISKYAESEKIKKHFEEAYPNCTVLEARPCYKPLGM
AFVTFHNETITAIILKDFNVCKCQGCTCRGEPRASSCSEALHISNWTVTY
APDPQNIYWEHLSIRGFIWWLRCLVINVVLFILLFFLTTPAIIITTMDKF
NVTKPVEYLNNPIITQFFPTLLLWCFSALLPTIVYYSAFFEAHWTRSGEN
RTTMHKCYTFLIFMVLLLPSLGLSSLDLFFRWLFDECVFLPDNGAFFVNY
VIASAFIGNAMDLLRIPGLLMYEFQFGAAYAWMMCVFTVVMTYSITCPII
VPFGLMYMLLKHLVDRYNLYYAYLPAKLDKKIHSGAVNQVVAAPILCLFW
LLFFSTMRTGFLAPTSMFTFVVLVITIVICLCHVCFGHFKYLSAHNYK
Ligand information
Ligand IDLBN
InChIInChI=1S/C42H82NO8P/c1-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-42(45)51-40(39-50-52(46,47)49-37-36-43(3,4)5)38-48-41(44)34-32-30-28-26-24-22-19-17-15-13-11-9-7-2/h20-21,40H,6-19,22-39H2,1-5H3/b21-20-/t40-/m1/s1
InChIKeyWTJKGGKOPKCXLL-VYOBOKEXSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)([O-])OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCCCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)([O-])OCC[N+](C)(C)C)OC(=O)CCCCCCC/C=C\CCCCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P]([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/CCCCCCCC
CACTVS 3.385CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P]([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCCCCCCCC
ACDLabs 12.01C(C(COC(CCCCCCCCCCCCCCC)=O)OC(CCCCCCCC=[C@H]CCCCCCCC)=O)OP(OCC[N+](C)(C)C)([O-])=O
FormulaC42 H82 N O8 P
Name1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine;
(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate
ChEMBL
DrugBank
ZINC
PDB chain8wg3 Chain A Residue 1204 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wg3 Mechanosensitive channel TMEM63B functions as a plasma membrane lipid scramblase
Resolution3.4 Å
Binding residue
(original residue number in PDB)
W430 N438 H504 W505
Binding residue
(residue number reindexed from 1)
W269 N277 H343 W344
Annotation score1
External links
PDB RCSB:8wg3, PDBe:8wg3, PDBj:8wg3
PDBsum8wg3
PubMed
UniProtP42212|GFP_AEQVI Green fluorescent protein (Gene Name=GFP);
Q3TWI9

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