Structure of PDB 8vdk Chain A Binding Site BS04

Receptor Information
>8vdk Chain A (length=432) Species: 359787 (Staphylococcus aureus subsp. aureus JH1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKNVNDLITSNTTLTVVDADNSKTIVPAQDYLSLKSQITVDDKVKSGDYF
TIKYSDTVQVYGLNPEDIKNIGDIKDPNNGETIATAKHDTANNLITYTFT
DYVDRFNSVKMGINYSIYMDADTIPVDKKDVPFSVTIGNQITTTTADITY
PAYKEADNNSIGSAFTETVSHVGNVEDPGYYNQVVYVNPMDKDLKGAKLK
VEAYHPKYPTNIGQINQNVTNIKIYRVPEGYTLNKGYDVNTNDLVDVTDE
FKNKMTYGSNQSVNLDFGDITSAYVVMVNTKFQYTNSESPTLVQMATLSS
TGNKSVSTGNALGFTNQEVYKIGNYVWEDTNKNGVQELGEKGVGNVTVTV
FDNNTNTKVGEAVTKEDGSYLIPNLPNGDYRVEFSNLPKGYEVTPSKQGN
NEELDSNGLSSVITVNGKDNLSADLGIYKPKY
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8vdk Chain A Residue 515 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vdk Crystal Structure of LPXTG-motif Cell Wall Anchor Domain Protein MSCRAMM_SdrD from Staphylococcus aureus
Resolution1.8 Å
Binding residue
(original residue number in PDB)		D18 D20 S22 T24 D30
Binding residue
(residue number reindexed from 1)		D18 D20 S22 T24 D30
Annotation score4
External links
PDB RCSB:8vdk, PDBe:8vdk, PDBj:8vdk
PDBsum8vdk
PubMed
UniProtQ99W47|SDRD_STAAM Serine-aspartate repeat-containing protein D (Gene Name=sdrD)

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