Structure of PDB 8ryr Chain A Binding Site BS04
Receptor Information
>8ryr Chain A (length=334) Species:
376
(Bradyrhizobium sp.) [
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DLKLPRQKVELVAPPFVHAHEQATKQGPKIVEFKLTIEEKKVVIDEKGTT
FQAMTFNGSMPGPLMVVHEGDYVETTLVNPATNTMPHNIDFHSATGALGG
GALTLINPGEQVVLRWKATKTGVFVYHCAPGGPMIPWHVVSGMNGAVMVL
PRDGLNDGKGHALKYDKVYYVGEQDMYVPRDEKGNFKSYDSPGEAFTDTE
EMMKKLIPSHVVFNGKVGALTGKNALTANVGENVLIVHSQANRDSRPHLI
GGHGDYVWETGKFGNAPEVGLETWFIRGGSAGAAMYKFMQPGIYAYVTHN
LIEAADLGATAHFKVEGKWNDDLMTQVKAPAEIP
Ligand information
Ligand ID
NO2
InChI
InChI=1S/HNO2/c2-1-3/h(H,2,3)/p-1
InChIKey
IOVCWXUNBOPUCH-UHFFFAOYSA-M
SMILES
Software
SMILES
ACDLabs 10.04
CACTVS 3.341
[O-]N=O
OpenEye OEToolkits 1.5.0
N(=O)[O-]
Formula
N O2
Name
NITRITE ION
ChEMBL
DrugBank
DB12529
ZINC
PDB chain
8ryr Chain A Residue 403 [
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Receptor-Ligand Complex Structure
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PDB
8ryr
Spectroscopically validated pH-dependent MSOX movies provide detailed mechanism of copper nitrite reductases.
Resolution
1.25 Å
Binding residue
(original residue number in PDB)
D92 H94 H129
Binding residue
(residue number reindexed from 1)
D90 H92 H127
Annotation score
5
External links
PDB
RCSB:8ryr
,
PDBe:8ryr
,
PDBj:8ryr
PDBsum
8ryr
PubMed
39002715
UniProt
Q89EJ6
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