Structure of PDB 8jq5 Chain A Binding Site BS04

Receptor Information
>8jq5 Chain A (length=420) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPNQELTGGIGVSGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIY
AVTDKKRDLDTLEPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVS
SPDPKVRDFWIRHGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKK
TPRLRLLKALDEIIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNY
AISRNKLWTIDAGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHV
VIMDDALIRITRSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKS
LLQAMLAPIDQLKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTP
VGFDWMNNIHQYEKDVQFKR
Ligand information
Ligand IDPSV
InChIInChI=1S/C6H12O6/c7-1-3-4(9)5(10)6(11,2-8)12-3/h3-5,7-11H,1-2H2/t3-,4-,5-,6+/m1/s1
InChIKeyRFSUNEUAIZKAJO-KAZBKCHUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C([C@@H]1[C@H]([C@H]([C@@](O1)(CO)O)O)O)O
ACDLabs 11.02OC1C(O)C(OC1(O)CO)CO
CACTVS 3.352OC[CH]1O[C](O)(CO)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.0C(C1C(C(C(O1)(CO)O)O)O)O
CACTVS 3.352OC[C@H]1O[C@@](O)(CO)[C@H](O)[C@@H]1O
FormulaC6 H12 O6
Namealpha-D-psicofuranose;
alpha-D-psicose;
D-psicose;
psicose
ChEMBL
DrugBank
ZINC
PDB chain8jq5 Chain A Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8jq5 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Resolution1.73 Å
Binding residue
(original residue number in PDB)		D153 K155
Binding residue
(residue number reindexed from 1)		D153 K155
Annotation score1
Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8jq5, PDBe:8jq5, PDBj:8jq5
PDBsum8jq5
PubMed38430263
UniProtA0A171J5T1

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