Structure of PDB 8bpd Chain A Binding Site BS04

Receptor Information
>8bpd Chain A (length=370) Species: 346185 (Flagellimonas eckloniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKWLSGSWGVRLIVEGGVELDKASSYSDWVKGAQNIVDNLPTVGHVFTNF
THRAHGYWFTLRENPYVDVAKEIHPEFVPSLENEKIILDVIDILHKGGKK
VILYIATDGPSARSGTRNNAEYKAAWENYYNAKFDGDEGLAYRTLCKGYI
ERFKGLADGYWLDHVGGIAGELTDFIDMIREVDPSVMIASNGIVENESSN
KSKYFKDENGDDLEVDSDGTNDPDGRKYKIRSFNLNGSYVDFTSGHPTPL
AWGAPPNSWAYEEFTFPEIVDAMASYDPVKHTIKHAWMPMRMKWTSPRAN
LMFDVEQAYRFVRTLTDGGCAITWGNTQTNGSMTKEEMDIMKEVDRRLRM
RPMPDYIPYKRPAGAKLVGE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8bpd Chain A Residue 406 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8bpd Structural and functional characterization of the novel endo-alpha (1,4)-fucoidanase Mef1 from the marine bacterium Muricauda eckloniae.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		D242 D246 D248
Binding residue
(residue number reindexed from 1)		D218 D222 D224
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.212: endo-(1->4)-fucoidanase.
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8bpd, PDBe:8bpd, PDBj:8bpd
PDBsum8bpd
PubMed37877949
UniProtA0A0N8WFH1

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