Structure of PDB 7vws Chain A Binding Site BS04

Receptor Information
>7vws Chain A (length=315) Species: 1931 (Streptomyces sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TIVQELDQAGITDSGLRADYITVSRLFREIGRGRYLGRYMFPAAKRPYFD
AFITFVAYVDNLTDDIKHSVEVRARRLDEWERTYLAVAKGPLSRSEQTDA
AVARALVHTLRTWDLPYLRVPEFVDGNRKALTTYEYANDEALDEFLETVT
LLPAVWINQIFEPRSAEAEELCRHTITAFQLLDFIWDLREDLDLGRLYLP
MEHLDRFGVTRADLDRQIGSGHLTDDVRELLRFEIGRAKKHLDAGRGWPQ
SLHPTSRTFMEADIQLHDSMFPQLTKNGYAFFKTAIARTASAIARARKIN
QQAIRGGYRVRAPFQ
Ligand information
Ligand ID83B
InChIInChI=1S/C10H22O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,10H,4,6-8H2,1-3H3,(H,14,15)(H2,11,12,13)/t10-/m0/s1
InChIKeyMDPFRHMROKBMSH-JTQLQIEISA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH](CCO[P](O)(=O)O[P](O)(O)=O)CCC=C(C)C
OpenEye OEToolkits 2.0.7CC(CCC=C(C)C)CCOP(=O)(O)OP(=O)(O)O
CACTVS 3.385C[C@H](CCO[P](O)(=O)O[P](O)(O)=O)CCC=C(C)C
OpenEye OEToolkits 2.0.7C[C@@H](CCC=C(C)C)CCOP(=O)(O)OP(=O)(O)O
FormulaC10 H22 O7 P2
Name[(3S)-3,7-dimethyloct-6-enyl] phosphono hydrogen phosphate
ChEMBLCHEMBL4091122
DrugBank
ZINC
PDB chain7vws Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vws Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Resolution1.71 Å
Binding residue
(original residue number in PDB)		R35 D191
Binding residue
(residue number reindexed from 1)		R34 D183
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 22:26:30 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7vws', asym_id = 'A', bs = 'BS04', title = 'Structural Basis for the Prenylation Reaction of...ucts Catalyzed by Squalene Synthase-Like Enzymes.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7vws', asym_id='A', bs='BS04', title='Structural Basis for the Prenylation Reaction of...ucts Catalyzed by Squalene Synthase-Like Enzymes.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009058', uniprot = '', pdbid = '7vws', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009058', uniprot='', pdbid='7vws', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>