Structure of PDB 7nl6 Chain A Binding Site BS04

Receptor Information
>7nl6 Chain A (length=132) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNF
LQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVG
EEDCAEFSGNGWNDDKCNLAKFWICKKSAASC
Ligand information
Ligand IDUH8
InChIInChI=1S/C14H18N4O5/c1-22-14-11(13(21)12(20)10(7-19)23-14)18-6-9(16-17-18)8-3-2-4-15-5-8/h2-6,10-14,19-21H,7H2,1H3/t10-,11+,12-,13-,14+/m1/s1
InChIKeyGWSVVXWGZNVVOP-ITGHMWBKSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1n2cc(nn2)c3cccnc3
OpenEye OEToolkits 2.0.7COC1C(C(C(C(O1)CO)O)O)n2cc(nn2)c3cccnc3
OpenEye OEToolkits 2.0.7CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)n2cc(nn2)c3cccnc3
CACTVS 3.385CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1n2cc(nn2)c3cccnc3
FormulaC14 H18 N4 O5
NameMethyl 2-deoxy-2-(4-(pyridine-3-yl))-1,2,3-triazol-1-yl)-alpha-D-mannopyranoside;
(2~{R},3~{S},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-methoxy-5-(4-pyridin-3-yl-1,2,3-triazol-1-yl)oxane-3,4-diol
ChEMBL
DrugBank
ZINC
PDB chain7nl6 Chain A Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7nl6 Sweet Drugs for Bad Bugs: A Glycomimetic Strategy against the DC-SIGN-Mediated Dissemination of SARS-CoV-2.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
E347 N349 E354 N365
Binding residue
(residue number reindexed from 1)
E95 N97 E102 N113
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7nl6, PDBe:7nl6, PDBj:7nl6
PDBsum7nl6
PubMed34652144
UniProtQ9NNX6|CD209_HUMAN CD209 antigen (Gene Name=CD209)

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