Structure of PDB 7c4b Chain A Binding Site BS04

Receptor Information

>7c4b Chain A (length=297) Species: 185431 (Trypanosoma brucei brucei TREU927) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SSSSMILKYPYRVVDTHEKLKEAVTSLQGARSIALDIEAFCTTDQAKQLG
RISLVQACSDAKPVVFLFDVLTLTPDVFVKDMQSLLSDREIRKLFFDCRR
DVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSVNRRSGMGYVLKSVAGLT
RQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLLSNYLVGN
KDVPVDVVAVERLTAQYVEHYAVGKPVITEADATPAEVNRAWLERYIGPG
GGCHFCGAKGHTEAECFKKQNGKAKCSFCGEVGHTARNCFKKHPQLL

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

7c4b Chain A Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	7c4b Structural basis for guide RNA trimming by RNase D ribonuclease in Trypanosoma brucei.
Resolution	2.101 Å
Binding residue (original residue number in PDB)	D80 E82 D230
Binding residue (residue number reindexed from 1)	D36 E38 D186
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0000175	3'-5'-RNA exonuclease activity
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0008408	3'-5' exonuclease activity
GO:0046872	metal ion binding

	Biological Process
GO:0006139	nucleobase-containing compound metabolic process

	Cellular Component
GO:0005739	mitochondrion
GO:1990923	PET complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7c4b, PDBe:7c4b, PDBj:7c4b
PDBsum	7c4b
PubMed	33332555
UniProt	Q38DE2

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