Structure of PDB 7b7f Chain A Binding Site BS04

Receptor Information

>7b7f Chain A (length=354) Species: 2218628 (Photorhabdus laumondii)

IENSAIALSGIVSVANNADNRLEVFGVSTDSAVWHNWQTAPLPNSSWAGW
NKFNGVVTSKPAVHRNSDGRLEVFVRGTDNALWHNWQTAADTNTWSSWQP
LYGGITSNPEVCLNSDGRLEVFVRGSDNALWHIWQTAAHTNSWSNWKSLG
GTLTSNPAAHLNADGRIEVFARGADNALWHIWQTAAHTDQWSNWQSLKSV
ITSDPVVINNCDGRLEVFARGADSTLRHISQIGSDSVSWSNWQCLDGVIT
SAPAAVKNISGQLEVFARGADNTLWRTWQTSHNGPWSNWSSFTGIIASAP
TVAKNSDGRIEVFVLGLDKALWHLWQTTSSTTSSWTTWALIGGITLIDAS
VILE

Ligand information

• Ligand ID: FUC
• InChI: InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6+/m0/s1
• InChIKey: SHZGCJCMOBCMKK-SXUWKVJYSA-N
• SMILES:
  CACTVS 3.341: C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)C
  OpenEye OEToolkits 1.5.0: CC1C(C(C(C(O1)O)O)O)O
  OpenEye OEToolkits 1.5.0: C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O
  CACTVS 3.341: C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
• Formula: C6 H12 O5
• Name: alpha-L-fucopyranose;
  alpha-L-fucose;
  6-deoxy-alpha-L-galactopyranose;
  L-fucose;
  fucose
• ChEMBL: CHEMBL1232862
• DrugBank: DB04473
• ZINC: ZINC000001532814
• PDB chain: 7b7f Chain A Residue 604

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7b7f Visualization of hydrogen atoms in a perdeuterated lectin-fucose complex reveals key details of protein-carbohydrate interactions.
• Resolution: 1.6 Å
• Binding residue (original residue number in PDB): G119 G120 G141 S142 W147
• Binding residue (residue number reindexed from 1): G103 G104 G125 S126 W131
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:7b7f, PDBe:7b7f, PDBj:7b7f
• PDBsum: 7b7f
• PubMed: 33765407
• UniProt: Q7N8J0