Structure of PDB 6zhv Chain A Binding Site BS04

Receptor Information

>6zhv Chain A (length=341) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGET
QINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYG
RNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVD
GLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNL
QEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSG
FANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGA
TYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF

Ligand information

Ligand ID

QLB

InChI

InChI=1S/C14H30O4/c1-2-3-4-5-6-7-9-16-11-13-18-14-12-17-10-8-15/h15H,2-14H2,1H3

InChIKey

XIVLVYLYOMHUGB-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.385 OpenEye OEToolkits 2.0.7	CCCCCCCCOCCOCCOCCO

Formula

C14 H30 O4

Name

2-[2-(2-octoxyethoxy)ethoxy]ethanol

PDB chain

6zhv Chain A Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6zhv Crystal structure of OmpF porin soaked in ciprofloxacin metaloantibiotic
Resolution	1.945 Å
Binding residue (original residue number in PDB)	L249 A250 V282 A296 F317
Binding residue (residue number reindexed from 1)	L228 A229 V261 A275 F296
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0015288	porin activity

	Biological Process
GO:0034220	monoatomic ion transmembrane transport

	Cellular Component
GO:0009279	cell outer membrane
GO:0016020	membrane

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6zhv, PDBe:6zhv, PDBj:6zhv
PDBsum	6zhv
PubMed
UniProt	P02931\|OMPF_ECOLI Outer membrane porin F (Gene Name=ompF)

[Back to BioLiP]