Structure of PDB 6xup Chain A Binding Site BS04

Receptor Information

>6xup Chain A (length=402) Species: 2234 (Archaeoglobus fulgidus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSS
LINQLKSQISSKIDEVWHIHNINISEFIYDSPHFDSIKSQVDNAIDTGVD
GIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQ
FVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNVNLFCFAMVFKKDGTML
WNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPK
MKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMPYEGTKVK
LSSKRYLLTLLQPMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLS
KMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRSLQTNPW
FL

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6xup Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6xup Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT
Resolution	1.9 Å
Binding residue (original residue number in PDB)	N132 I412 N413
Binding residue (residue number reindexed from 1)	N123 I387 N388
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0003723	RNA binding
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:6xup, PDBe:6xup, PDBj:6xup
PDBsum	6xup
PubMed
UniProt	O28951\|PIWI_ARCFU Piwi protein (Gene Name=AF_1318)

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