Structure of PDB 6puq Chain A Binding Site BS04

Receptor Information
>6puq Chain A (length=171) Species: 402676 (Schizosaccharomyces japonicus yFS275) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKLTDISACSINIFYSTLGGSTQKFAEHVADRIRSSLQTELVEILNLDYI
DLDEYFSKGNSNTVYLVLLPSYAIESSIDYFLSALQTTIDDFRIVARPLE
KLRGFAVLGFGDFEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKL
EKAQVYEAMEAWTDLFLQYAK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6puq Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6puq Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN.
Resolution1.56 Å
Binding residue
(original residue number in PDB)		A183 V184 L220
Binding residue
(residue number reindexed from 1)		A106 V107 L143
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.3.44: tRNA 4-demethylwyosine synthase (AdoMet-dependent).
Gene Ontology
Molecular Function
GO:0009055 electron transfer activity
GO:0010181 FMN binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0008033 tRNA processing

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Molecular Function
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Biological Process
External links
PDB RCSB:6puq, PDBe:6puq, PDBj:6puq
PDBsum6puq
PubMed35693892
UniProtB6K6D6

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