Structure of PDB 6kbd Chain A Binding Site BS04

Receptor Information

>6kbd Chain A (length=616) Species: 83332,523850 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

IDELTALGGLLHDIGKPVQRAGLDHSTQGARFLRDLAENTGRAEYELLSL
FSEFLMIRRIKELSPERFGLTMEDVLNALWIVYEADNLASSRPLYSVFNP
GKAYPWAELDFEKELPVPGDVFSIRSQDYRELVKRLWEELSKAKLRSDRL
LPVLEKYLTFVSSVTSEGNIISLYDHMRMTSAIALAMLRAGCTAEDVRSG
RCRKEKRFLLIEGDFSGIQDFIYRVSGKGTLKYLRARSAYLELIGWDVVL
EILSRLGLTRANVVFNAGGHFMIIAQNTPDAVKELEEIRAKAVEWLYREF
ESDLYLAIEWEPVSGREFGRENLFAEARKRLKHKLTVRKLKCPTCNRLVS
LGGNLPKLLGFGRTAKNDAGVLVEGPFSGFVPYLQGGRPVGEQILVKNTL
NPGEIPESAQFVPYFVADYFKKARLGVLRLDVDNLGQAFTHGFNTISRTA
AFSRMLSLFFRQHINYVLARPKLRPITGDDPARPREATIIYSGGDDVFVV
GAWDDVIEFGIELRERFHEFTQGKLTVSAGIGMFPDKYPISVMAREVGDL
EDAAKSLPGKNGVALFDREFTFGWDELLSKVIEEKYAFIYKLLELLPTDA
KQLKTALHLYIYRTRK

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6kbd Chain A Residue 904 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6kbd Mycobacterium tuberculosis CRISPR/Cas system Csm1 holds clues to the evolutionary relationship between DNA polymerase and cyclase activity.
Resolution	3.0 Å
Binding residue (original residue number in PDB)	D555 D627 D628
Binding residue (residue number reindexed from 1)	D431 D495 D496
Annotation score	4

Enzymatic activity

Enzyme Commision number

2.7.7.-
3.1.-.-

External links

PDB	RCSB:6kbd, PDBe:6kbd, PDBj:6kbd
PDBsum	6kbd
PubMed	33352158
UniProt	B6YWB8\|CAS10_THEON CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) (Gene Name=csm1); P71629

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