Structure of PDB 6fcs Chain A Binding Site BS04

Receptor Information
>6fcs Chain A (length=613) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QRRLYDQAKAALAKGNSAPYMASRSALRDYPLEPYLAYDELTHRLKSASN
EEVERFLTEHGDLPQIGWLKLRWLRLLADRGDWKTFVNYYDPKLNFTELD
CLYGQYQLGHGQKAEGYATSERLWLVGKSQPAACDTLFGLWQGEGQLTEE
KVWKRLKLAAEARNYSLASHLAQRLPTLGNQGALMVSVAQNPAQLSQTGR
FSQRDHATADVVGLGLRRLARQDPEKALSLLDYYSSALPFSSDEKVAIAR
EIGLSLAKRFDPRALPLMTQYDPGLRDNTVTEWRTRLLLRLGRWDEAYAL
TRKLPQDLAATSRWRYWQARSLQLAQPNSKEPIALYQKLAGERDFYGFLA
ADRLSVPYKLGNRPAHIDPRVLQRVRNAASTRRAMEFFNRGEVINARREW
YHAARLFDRDELIAQARLAYDMQWYFPAIRSISQAQYWDDLDIRFPMAHR
ATLVREAKNRGLHSSWIFAITRQQSAFMSDARSGVGATGLMQLMPGTAKE
TSRKFGIPLASTQQLIVPDVNIRLGAAYLSQVHSQFNGNRVLASAAYNAG
PGRVRQWLKDTRHLAFDVWIETIPFDETRQYVQNVLSYAVIYGQKLNAPQ
PIVDWHERYFDDF
Ligand information
Ligand IDNM6
InChIInChI=1S/C11H20N2O7/c1-4(10(12)17)19-9-7(13-5(2)15)11(18)20-6(3-14)8(9)16/h4,6-9,11,14,16,18H,3H2,1-2H3,(H2,12,17)(H,13,15)/t4-,6-,7-,8-,9-,11-/m1/s1
InChIKeyMLHXTMGNPGMLSD-YVNCZSHWSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O)[CH]1NC(C)=O)C(N)=O
OpenEye OEToolkits 1.7.6C[C@H](C(=O)N)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)CO)O)NC(=O)C
ACDLabs 12.01O=C(N)C(OC1C(O)C(OC(O)C1NC(=O)C)CO)C
CACTVS 3.385C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@@H](O)[C@@H]1NC(C)=O)C(N)=O
OpenEye OEToolkits 1.7.6CC(C(=O)N)OC1C(C(OC(C1O)CO)O)NC(=O)C
FormulaC11 H20 N2 O7
Name2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranose;
(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanamide;
N-acetyl-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-beta-D-glucosamine;
2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucose;
2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-D-glucose;
2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-glucose
ChEMBL
DrugBank
ZINCZINC000033922542
PDB chain6fcs Chain D Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6fcs Exolytic and endolytic turnover of peptidoglycan by lytic transglycosylase Slt ofPseudomonas aeruginosa.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
Y557 G579
Binding residue
(residue number reindexed from 1)
Y528 G550
Annotation score1
Enzymatic activity
Enzyme Commision number 4.2.2.-
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Cellular Component
GO:0042597 periplasmic space

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Molecular Function

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Cellular Component
External links
PDB RCSB:6fcs, PDBe:6fcs, PDBj:6fcs
PDBsum6fcs
PubMed29632171
UniProtQ9HZI6

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