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Receptor Information

>6dns Chain A (length=590) Species: 264023 (Mariniflexile fucanivorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTVDY
VQLPLTSPNIFSPTHVAPHPIIESLWQGDTDANGDPINLVAPRESVDDPL
LSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSARWMEWCDTNT
EAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSADN
VMEDECGDDPASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREGNP
FTSATLFDDYTFGHPFGGAGNMVVPEALYTYNHDLVVFMQTNNGYAFRDD
TRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGITW
GTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYTIL
PAIYPGQPYSHNLVEGVDFWDPEGVGITGLTASGTLPAWLTISQTATGTW
TLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPAGFTNPGDGTP
VWFSNPMVLAKATALDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLVLTQ
NSDDTWRLSGMPTAADAGENSFTFNVSDILSSDTEIKITV

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

6dns Chain A Residue 705 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6dns Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29.
Resolution	2.24 Å
Binding residue (original residue number in PDB)	G528 D560 E562 D564 D609
Binding residue (residue number reindexed from 1)	G498 D529 E531 D533 D578
Annotation score	4

Enzyme Commision number

	Molecular Function
GO:0005509	calcium ion binding

	Cellular Component
GO:0016020	membrane

PDB	RCSB:6dns, PDBe:6dns, PDBj:6dns
PDBsum	6dns
PubMed	30282808
UniProt	Q08I46

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Structure of PDB 6dns Chain A Binding Site BS04