Structure of PDB 5zb0 Chain A Binding Site BS04

Receptor Information

>5zb0 Chain A (length=187) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PGLFLTLEGLDGSGKTTQARRLAAFLEAQGRPVLLTREPGGGLPEVRSLL
LTQELSPEAEYLLFSADRAEHVRKVILPGLAAGKVVISDRYLDSSLAYQG
YGRGLPLPWLREVAREATRGLKPRLTFLLDLPPEAALEGLGLEFFRRVRE
GYLALARAEPGRFVVLDATLPEEEIARAIQAHLRPLL

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5zb0 Chain A Residue 205 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5zb0 Insights into product release dynamics through structural analyses of thymidylate kinase.
Resolution	1.19 Å
Binding residue (original residue number in PDB)	P40 F65 D68
Binding residue (residue number reindexed from 1)	P39 F64 D67
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.4.9: dTMP kinase.

Gene Ontology

	Molecular Function
GO:0004798	thymidylate kinase activity
GO:0005524	ATP binding
GO:0016301	kinase activity

	Biological Process
GO:0006227	dUDP biosynthetic process
GO:0006233	dTDP biosynthetic process
GO:0006235	dTTP biosynthetic process
GO:0009165	nucleotide biosynthetic process
GO:0016310	phosphorylation
GO:0046940	nucleoside monophosphate phosphorylation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol

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Cellular Component

External links

PDB	RCSB:5zb0, PDBe:5zb0, PDBj:5zb0
PDBsum	5zb0
PubMed	30447376
UniProt	Q5SHX3\|KTHY_THET8 Thymidylate kinase (Gene Name=tmk)

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