Structure of PDB 5ysb Chain A Binding Site BS04

Receptor Information

>5ysb Chain A (length=386) Species: 272626 (Listeria innocua Clip11262)

KVLNVWAMGDEAKSLKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVAS
KSGPDVVQMGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQ
FDGKTYGVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAALKLSKRG
KDMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGTPVFNKKPFVDTVTYLDS
FIKNGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAPDIDGKW
ATAVLPKKENNESSLGGANLSIFKYSNKKDDALKFMDYMSQPDVQLSWLK
DTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQFEEIAQLYG
KSWEQIYRGGADVQTQMDTFNDQVEALLKKLEHHHH

Ligand information

• Ligand ID: ZN
• InChI: InChI=1S/Zn/q+2
• InChIKey: PTFCDOFLOPIGGS-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Zn++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Zn+2]
• Formula: Zn
• Name: ZINC ION
• ChEMBL: CHEMBL1236970
• DrugBank: DB14532
• PDB chain: 5ysb Chain A Residue 514

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5ysb Structural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
• Resolution: 2.2 Å
• Binding residue (original residue number in PDB): E103 H419
• Binding residue (residue number reindexed from 1): E69 H385
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding
• GO:1901982 maltose binding

Biological Process

• GO:0015768 maltose transport
• GO:0042956 maltodextrin transmembrane transport

Cellular Component

• GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing

External links

• PDB: RCSB:5ysb, PDBe:5ysb, PDBj:5ysb
• PDBsum: 5ysb
• PubMed: 29678880
• UniProt: Q92AS8