Structure of PDB 5o9r Chain A Binding Site BS04

Receptor Information
>5o9r Chain A (length=429) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFEKTPAIKIVGNKFFDSESGEQFFIKGIAYQLQRSSYIDALADPKICLR
DIPFLKMLGVNTLRVYAIDPTKSHDICMEALSAEGMYVLLDLSEPDISIN
RENPSWDVHIFERYKSVIDAMSSFPNLLGYFAGNEVTNDHTNTFASPFVK
AAIRDAKEYISHSNHRKIPVGYSTNDDAMTRDNLARYFVCGDVKADFYGI
NMYEWCGYSTYGTSGYRERTKEFEGYPIPVFFSEFGCNLVRPRPFTEVSA
LYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGVDILPDFKNLKKEFA
KADPKGITEEEYLTSVECPHIAVGVWEANEKLPETPDRSKCACLDEILPC
EIVPGKYEEYFSYLCSKVDCSDILANGKTGEYGEFSDCSVEQKLSLQLSK
LYCKIGANDRHCPLNDKNVYFNLESLQPC
Ligand information
Ligand ID9PK
InChIInChI=1S/C26H39N3O16S/c30-5-12-15(33)18(36)19(37)25(42-12)45-23-17(35)14(7-32)43-26(21(23)39)44-22-16(34)13(6-31)41-24(20(22)38)29-4-10(27-28-29)8-40-9-11-2-1-3-46-11/h1-4,12-26,30-39H,5-9H2/t12-,13-,14-,15-,16-,17-,18+,19-,20-,21-,22+,23+,24-,25+,26+/m1/s1
InChIKeyPCTXRGORDHBRNF-KACUVCQDSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(COCc5sccc5)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.6c1cc(sc1)COCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O)O
CACTVS 3.385OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(COCc5sccc5)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.6c1cc(sc1)COCc2cn(nn2)C3C(C(C(C(O3)CO)O)OC4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)O)O)O)O
FormulaC26 H39 N3 O16 S
Name(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(thiophen-2-ylmethoxymethyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol
ChEMBL
DrugBank
ZINC
PDB chain5o9r Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5o9r Inhibitors against Fungal Cell Wall Remodeling Enzymes.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
Q60 Y107 S134 P136 S139 I140 R142 Y244 E275 Y307
Binding residue
(residue number reindexed from 1)
Q32 Y66 S93 P95 S98 I99 R101 Y203 E234 Y266
Annotation score1
Binding affinityMOAD: Kd=4.09uM
PDBbind-CN: -logKd/Ki=5.39,Kd=4.09uM
Enzymatic activity
Enzyme Commision number 2.4.1.-
External links
PDB RCSB:5o9r, PDBe:5o9r, PDBj:5o9r
PDBsum5o9r
PubMed29164827
UniProtQ06135|GAS2_YEAST 1,3-beta-glucanosyltransferase GAS2 (Gene Name=GAS2)

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