Structure of PDB 5nth Chain A Binding Site BS04

Receptor Information
>5nth Chain A (length=537) Species: 5664 (Leishmania major) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SAMKRPRSNSIVEETAVSAYVQTCTNFKSNVTFTDISKVSCVAYHVLLVG
ALEQLRDNSLKSVLFYCPAVAEALQRVKAGSTVKTLAEVPGRKGYTEVMV
TALPATTSRTNCPYRADSMSEAVAAACGSVEEGEVLDVYVCAPAGSETAV
ANAVARAAPHSYTAKAGQATKAYMKQAMSLNVVMSSRAAFTQELVRGKSV
CVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYAAELGVDMTVIK
GDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGIV
YDCGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIAN
ISVTLCLAENAIGPHSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVYY
ATGEQDFVPDVLIDMATLTGAQGVATGSKHAGVYASDAEAEKDMISAGLQ
SGDLCYPVLYCPEYHEEVYKSPCADMRNIANSSSSAGSSCGGYFVEQHLS
ERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH
Ligand information
Ligand IDBB2
InChIInChI=1S/C19H35N3O5/c1-4-5-6-8-14(11-16(24)21-27)18(25)20-17(13(2)3)19(26)22-10-7-9-15(22)12-23/h13-15,17,23,27H,4-12H2,1-3H3,(H,20,25)(H,21,24)/t14-,15+,17+/m1/s1
InChIKeyXJLATMLVMSFZBN-VYDXJSESSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCC[CH](CC(=O)NO)C(=O)N[CH](C(C)C)C(=O)N1CCC[CH]1CO
OpenEye OEToolkits 1.5.0CCCCCC(CC(=O)NO)C(=O)NC(C(C)C)C(=O)N1CCCC1CO
ACDLabs 10.04O=C(N1C(CO)CCC1)C(NC(=O)C(CC(=O)NO)CCCCC)C(C)C
CACTVS 3.341
OpenEye OEToolkits 1.5.0
CCCCC[C@H](CC(=O)NO)C(=O)N[C@@H](C(C)C)C(=O)N1CCC[C@H]1CO
FormulaC19 H35 N3 O5
NameACTINONIN;
2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE
ChEMBLCHEMBL308333
DrugBankDB04310
ZINCZINC000003979014
PDB chain5nth Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5nth Structural Characterization of Acidic M17 Leucine Aminopeptidases from the TriTryps and Evaluation of Their Role in Nutrient Starvation inTrypanosoma brucei.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
K299 D304 H315 D389 E391 L420
Binding residue
(residue number reindexed from 1)
K297 D302 H313 D387 E389 L418
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) K311 R393
Catalytic site (residue number reindexed from 1) K309 R391
Enzyme Commision number 3.4.11.-
Gene Ontology
Molecular Function
GO:0004177 aminopeptidase activity
GO:0008233 peptidase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
GO:0070006 metalloaminopeptidase activity
Biological Process
GO:0006508 proteolysis
GO:0019538 protein metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5nth, PDBe:5nth, PDBj:5nth
PDBsum5nth
PubMed28815215
UniProtQ4QH17

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