Structure of PDB 5ldt Chain A Binding Site BS04

Receptor Information
>5ldt Chain A (length=403) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TPLEEAIKDVDVSGVLRYRYDTGNFDKNFLNNSNLNNSKQDHKYRAQVNF
SAAIADNFKAFVQFDYNAVDGGTGVDNATNAEKGLFVRQLYLTYTNEDVA
TSVIAGKQQLNIIWTDNGVDGLVGTGVKVVNNSIDGLTLAAFAVDSFMAA
EQGSDLLGQSTYVGNGKNNNDSFKLDSIGNLYGAAAVGSYDLAGGQFNPQ
LWLAYWDQVAFFYAVDAAYSTTIGINWTLEGAYLGNSLDSELDDKKTYAN
GNLFALKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEI
FYTTGSRLNGDTGRNIFGYVTGGYTFNETVRVGADFVYGGTKTEATTHLG
GGKKLEAVARVDYKYSPKLNFSAFYSYVNLDQGVNTNESADHSTVRLQAL
YKF
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5ldt Chain A Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5ldt MOMP from Campylobacter jejuni Is a Trimer of 18-Stranded beta-Barrel Monomers with a Ca(2+) Ion Bound at the Constriction Zone.
Resolution2.88 Å
Binding residue
(original residue number in PDB)		G72 N77
Binding residue
(residue number reindexed from 1)		G72 N77
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5ldt, PDBe:5ldt, PDBj:5ldt
PDBsum5ldt
PubMed27693650
UniProtQ659I5

[Back to BioLiP]