Structure of PDB 5la0 Chain A Binding Site BS04

Receptor Information
>5la0 Chain A (length=476) Species: 492476 (Acetivibrio thermocellus JW20) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASSPQRGRPRLNAARTTFVGDNGQPLRGPYTSTEWTAAAPYDQIARVKEL
GFNAVHLYAECFDPRYPAPGSKAPGYAVNEIDKIVERTRELGLYLVITIG
NGANNGNHNAQWARDFWKFYAPRYAKETHVLYEIHNEPVAWGPPYSSSTA
NPPGAVDMEIDVYRIIRTYAPETPVLLFSYAVFGGKGGAAEALKDIRAFN
KAVFGNENAVWTNEAVAFHGYAGWQETTIAVEELLKAGYPCFMTEYAGGG
GLDVELTYELERLGVSWLTFQYIPPTGVSDDVTKPEYFSALVENSGLSWT
PDYGNWPAARGVYGNGGLARETATWINNFLTGTTRIEAEDFDWGGNGVSY
YDTDSVNVGGQYRPDEGVDIEKTSDTGGGYNVGWISEGEWLEYTIRVRNP
GYYNLSLRVAGISGSRVQVSFGNQDKTGVWELPATGGFQTWTTATRQVFL
GAGLQKLRINALSGGFNLNWIELSPI
Ligand information
Ligand IDARA
InChIInChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5+/m0/s1
InChIKeySRBFZHDQGSBBOR-QMKXCQHVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)O)O)O)O
OpenEye OEToolkits 1.5.0C1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O
CACTVS 3.341O[C@H]1CO[C@@H](O)[C@H](O)[C@H]1O
CACTVS 3.341O[CH]1CO[CH](O)[CH](O)[CH]1O
ACDLabs 10.04OC1C(O)COC(O)C1O
FormulaC5 H10 O5
Namealpha-L-arabinopyranose;
alpha-L-arabinose;
L-arabinose;
arabinose
ChEMBLCHEMBL505348
DrugBank
ZINCZINC000001532575
PDB chain5la0 Chain A Residue 605 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5la0 The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans.
Resolution1.65 Å
Binding residue
(original residue number in PDB)		E68 N135 G136 N139 V318
Binding residue
(residue number reindexed from 1)		E34 N101 G102 N105 V278
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246 carbohydrate binding
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5la0, PDBe:5la0, PDBj:5la0
PDBsum5la0
PubMed27531750
UniProtA3DHG6

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