Structure of PDB 5k9h Chain A Binding Site BS04

Receptor Information
>5k9h Chain A (length=554) Species: 32644 (unidentified) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EPCGPVPTENQLRWQDMEMYAFIHYSLNTYTDEEWGYGNEDPQLFNPSSL
DCRQWARVCKQAGMRGIIFTAKHHCGFCMWPSAYTEYSVKNSPWKNGKGD
VVRELADACREEGLKFAVYLSPWDRNHPAYGQPAYVAYFRNQLRELLTNY
GEIFEVWFDGANGGDGWYGGANETRKIDRTTYYQWPETYKMIRQLQPNCL
IWNDGSDRGDLRWVGTEAGNVGETNWSLLNHDGEVEWHMLHYGLENGDSW
VPGETNTSIRPGWFYHDTENEHVKSLSKLMDTYYKSVGRNSTLLLNFPIA
PNGRIHPNDSLRGIAFKKMIGEVFRKNLAEKARTQTKGDETVIDFGKPTT
FNRFLAEEDIRYGQRVKKFLLEAEINGQWQQLKDALVENGDGLTTIGHRR
IICFPTVNATKLRFTVVNTKCEPFIKKLGVYLAPELTADIPDAGEKKSSN
LHLFFSSPTQMMIDWETEQTITSFRYLPPQESKDGTVTHYTLWASTDWSN
WTKLASGEFSNVVNNPIWQTIKFQPVRAKILKLDADRLATGNRMAYGDVE
VNLK
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain5k9h Chain A Residue 605 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5k9h The structure of a glycoside hydrolase 29 family member from a rumen bacterium reveals unique, dual carbohydrate-binding domains.
Resolution2.029 Å
Binding residue
(original residue number in PDB)		R336 D347 G349
Binding residue
(residue number reindexed from 1)		R333 D344 G346
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004560 alpha-L-fucosidase activity
GO:0016787 hydrolase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006004 fucose metabolic process
GO:0016139 glycoside catabolic process
Cellular Component
GO:0005764 lysosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5k9h, PDBe:5k9h, PDBj:5k9h
PDBsum5k9h
PubMed27710940
UniProtA0A1D5B391

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