Structure of PDB 5jlb Chain A Binding Site BS04

Receptor Information

>5jlb Chain A (length=248) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKMQCECTPLS
KDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVI
LTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYY
FMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKL
VPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGK

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

5jlb Chain A Residue 1808 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5jlb Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase
Resolution	1.5 Å
Binding residue (original residue number in PDB)	C1516 C1529 C1533 C1539
Binding residue (residue number reindexed from 1)	C61 C74 C78 C84
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	Y1579 Y1666
Catalytic site (residue number reindexed from 1)	Y124 Y211
Enzyme Commision number	2.1.1.- 2.1.1.359: [histone H3]-lysine(36) N-trimethyltransferase.

Gene Ontology

	Molecular Function
GO:0016279	protein-lysine N-methyltransferase activity
GO:0042054	histone methyltransferase activity
GO:0046975	histone H3K36 methyltransferase activity

	Cellular Component
GO:0005634	nucleus

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Molecular Function

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Cellular Component

External links

PDB	RCSB:5jlb, PDBe:5jlb, PDBj:5jlb
PDBsum	5jlb
PubMed	27474439
UniProt	Q9BYW2\|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2 (Gene Name=SETD2)

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