Structure of PDB 5iku Chain A Binding Site BS04
Receptor Information
>5iku Chain A (length=240) Species:
1498
(Hathewaya histolytica) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
GIPGTTTPITKEMEPNDDIKEANGPIVEGVTVKGDLNGSDDADTFYFDVK
EDGDVTIELPYSGSSNFTWLVYKEGDDQNHIASGIDKNNSKVGTFKSTKG
RHYVFIYKHDSASNISYSLNIKGLGNEKLKEKENNDSSDKATVIPNFNTT
MQGSLLGDDSRDYYSFEVKEEGEVNIELDKKDEFGVTWTLHPESNINDRI
TYGQVDGNKVSNKVKLRPGKYYLLVYKYSGSGNYELRVNK
Ligand information
Ligand ID
CA
InChI
InChI=1S/Ca/q+2
InChIKey
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
Formula
Ca
Name
CALCIUM ION
ChEMBL
DrugBank
DB14577
ZINC
PDB chain
5iku Chain A Residue 2004 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5iku
Ca2+-induced orientation of tandem collagen binding domains from clostridial collagenase ColG permits two opposing functions of collagen fibril formation and retardation.
Resolution
1.9 Å
Binding residue
(original residue number in PDB)
E780 E782 D803 D808 D811
Binding residue
(residue number reindexed from 1)
E12 E14 D35 D40 D43
Annotation score
4
Enzymatic activity
Enzyme Commision number
3.4.24.3
: microbial collagenase.
External links
PDB
RCSB:5iku
,
PDBe:5iku
,
PDBj:5iku
PDBsum
5iku
PubMed
30035850
UniProt
Q9X721
|COLG_HATHI Collagenase ColG (Gene Name=colG)
[
Back to BioLiP
]