Structure of PDB 5fvn Chain A Binding Site BS04

Receptor Information

>5fvn Chain A (length=342) Species: 550 (Enterobacter cloacae)

AEIYNKDGNKLDLYGKVDGLHYFSDDDSQDGDQTYMRLGFKGETQVNDQL
TGYGQWEYQIQGNSGENENNSWTRVAFAGLKFGDAGSFDYGRNYGVVYDV
TSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNSDFFGLVDGLNFAVQYQ
GKNGSASGEDQTNNGRTELRQNGDGVGGSITYNLGEGFGIGTAVSSSKRT
SSQNDLTYGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGNLGWAN
KAQNFEVVAQYQFDFGLRPSVAYLQSKGKDLENGYGDQDLLKYVDVGATY
YFNKNMSTYVDYKINLLDDKEFTRNAGISTDDIVALGLVYQF

Ligand information

• Ligand ID: C8E
• InChI: InChI=1S/C16H34O5/c1-2-3-4-5-6-7-9-18-11-13-20-15-16-21-14-12-19-10-8-17/h17H,2-16H2,1H3
• InChIKey: FEOZZFHAVXYAMB-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04: O(CCCCCCCC)CCOCCOCCOCCO
  CACTVS 3.341
  OpenEye OEToolkits 1.5.0: CCCCCCCCOCCOCCOCCOCCO
• Formula: C16 H34 O5
• Name: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
• DrugBank: DB04233
• ZINC: ZINC000014881140
• PDB chain: 5fvn Chain A Residue 407

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5fvn Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis.
• Resolution: 1.45 Å
• Binding residue (original residue number in PDB): Q29 F110 D113 K313
• Binding residue (residue number reindexed from 1): Q29 F110 D113 K313
• Annotation score: 1

Gene Ontology

Molecular Function

• GO:0015288 porin activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006811 monoatomic ion transport
• GO:0034220 monoatomic ion transmembrane transport

Cellular Component

• GO:0009279 cell outer membrane
• GO:0016020 membrane
• GO:0046930 pore complex

External links

• PDB: RCSB:5fvn, PDBe:5fvn, PDBj:5fvn
• PDBsum: 5fvn
• PubMed: 27493217
• UniProt: Q93K99