Structure of PDB 5f56 Chain A Binding Site BS04

Receptor Information
>5f56 Chain A (length=703) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRPAHWLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRTELLALPLEL
TPNPALREAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIGAN
VHGFIPHRLNEGYGIHPDRVPEHAAAADLVVTVDCGVSNLDEVKSLLATG
TEVVVTDHHAPGENFPECLVVHPHLTPDYDPDRHNLTGAGVAYHLLWAVY
EELGRPEPRALLPLATLGTVADVAPLLGENRALVRAGLAEMARTELPGLR
ALMNEKRVRQPTARDVAFILAPRINAAGRMGEADRALELLTTPSDHEAKS
LAAYLEIRNQERRKIQDDMFAQALQLADPNDPALVLTHDDWHAGVMGIVA
SKLVETFNRPVYIVAQGKGSVRSTPGISAVQGLRESRDLLGRFGGHPGAA
GFSLDPQNFGALRERIHGYVRQFPTPVPAVRLDAPLPVAALTPELLSELS
ILEPFGEGNPRPLWHLRGPLTDTRLVGKQGDVLQFRFGGVKGMKYSERDD
AAGERDVAAELALNEWKGRTSLELHAAALRPLAPLALAGTEEGLPTLPRL
NPREAMTFLKTGAAAYAEQGVATYLRDNVPGLTLLDTNAPHPGGDLILYG
LPPESALRRWLHEAQEQGGRVAFALGPKTLAELDAALTLAKLLPDSHTEA
AQEAAADAYRSWQWAHHYRVLNDAGWSASVYAMLGLPVPAALPKAAEALA
LAA
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5f56 Chain A Residue 805 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5f56 Structural basis for DNA 5 -end resection by RecJ
Resolution2.3 Å
Binding residue
(original residue number in PDB)		D83 D135 H159 D223
Binding residue
(residue number reindexed from 1)		D82 D134 H158 D222
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004527 exonuclease activity
GO:0008409 5'-3' exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
GO:0006310 DNA recombination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5f56, PDBe:5f56, PDBj:5f56
PDBsum5f56
PubMed27058167
UniProtD0EM60

[Back to BioLiP]