Structure of PDB 4ymd Chain A Binding Site BS04

Receptor Information
>4ymd Chain A (length=154) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYAD
AQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFV
YSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCE
FDKE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain4ymd Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4ymd Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
Resolution2.87 Å
Binding residue
(original residue number in PDB)		E232 N234 E240 N252 D253
Binding residue
(residue number reindexed from 1)		E117 N119 E125 N137 D138
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4ymd, PDBe:4ymd, PDBj:4ymd
PDBsum4ymd
PubMed25912189
UniProtQ9BWP8|COL11_HUMAN Collectin-11 (Gene Name=COLEC11)

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