Structure of PDB 4fhf Chain A Binding Site BS04

Receptor Information
>4fhf Chain A (length=338) Species: 420246 (Geobacillus thermodenitrificans NG80-2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPFVPKLVYFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGET
ELARYRNAKSTLVVGVRRTLKFDSSKPSAEYAIPLATGCMGHCHYCYLQT
TLGPYIRVYVNLDDIFAQAQKYINERAPEITRFEAAATSDIVGIDHLTHS
LKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVIN
HFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQEL
ARQLEGMDLSDLTFELIQHRFTKPAKRVIEQRYPKTRLDLDETKRKYKWG
RYGIGKYVYRDEEAKELEDTMRRYIEQFFPGAYVQYFT
Ligand information
Ligand ID0TT
InChIInChI=1S/C20H28N4O10/c1-20(8-24(19(32)22-17(20)30)15-3-11(28)13(7-26)34-15)4-9-5-23(18(31)21-16(9)29)14-2-10(27)12(6-25)33-14/h5,10-15,25-28H,2-4,6-8H2,1H3,(H,21,29,31)(H,22,30,32)/t10-,11-,12+,13+,14+,15+,20+/m0/s1
InChIKeyWCJUEZCRTGBSQU-BZMYHREGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC1(CN(C(=O)NC1=O)C2CC(C(O2)CO)O)CC3=CN(C(=O)NC3=O)C4CC(C(O4)CO)O
CACTVS 3.370C[C@]1(CN([C@H]2C[C@H](O)[C@@H](CO)O2)C(=O)NC1=O)CC3=CN([C@H]4C[C@H](O)[C@@H](CO)O4)C(=O)NC3=O
ACDLabs 12.01O=C1N(C=C(C(=O)N1)CC2(C(=O)NC(=O)N(C2)C3OC(C(O)C3)CO)C)C4OC(CO)C(O)C4
OpenEye OEToolkits 1.7.6C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O)CC3=CN(C(=O)NC3=O)[C@H]4C[C@@H]([C@H](O4)CO)O
CACTVS 3.370C[C]1(CN([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O)CC3=CN([CH]4C[CH](O)[CH](CO)O4)C(=O)NC3=O
FormulaC20 H28 N4 O10
Name1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione
ChEMBL
DrugBank
ZINCZINC000095920557
PDB chain4fhf Chain A Residue 409 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4fhf Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
S76 K77 P78 S79 Y98 I270 R273 Y339
Binding residue
(residue number reindexed from 1)
S75 K76 P77 S78 Y97 I267 R270 Y336
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003913 DNA photolyase activity
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding
GO:1904047 S-adenosyl-L-methionine binding
Cellular Component
GO:0042601 endospore-forming forespore

View graph for
Molecular Function

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Cellular Component
External links
PDB RCSB:4fhf, PDBe:4fhf, PDBj:4fhf
PDBsum4fhf
PubMed22761404
UniProtA4IQU1

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