Structure of PDB 4f2a Chain A Binding Site BS04

Receptor Information
>4f2a Chain A (length=472) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQ
VKYGLHNIQISHLSIASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTA
WWLGIDQSIDFEIDSAIDLQINTQLTADSGRVRTDAPDCYLSFHKLLLHL
QGEREPGWIKQLFTNFISFTLKLVLKGQICKEINVISNIMADFVQTRAAS
ILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLPTFSPTL
LGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTN
QEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPD
QQHSVAYTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSES
IQSFLQSMITAVGIPEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGF
LLLQMDFGFPEHLLVDFLQSLS
Ligand information
Ligand ID0SF
InChIInChI=1S/C24H21ClF7N3O3/c1-2-15-11-16(6-7-18(15)25)37-20-8-9-33-22(34-20)35(13-19(36)23(28,29)30)12-14-4-3-5-17(10-14)38-24(31,32)21(26)27/h3-11,19,21,36H,2,12-13H2,1H3/t19-/m1/s1
InChIKeyBTIIJGFMCVLCET-LJQANCHMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCc1cc(ccc1Cl)Oc2ccnc(n2)N(Cc3cccc(c3)OC(C(F)F)(F)F)CC(C(F)(F)F)O
ACDLabs 12.01FC(F)C(F)(F)Oc1cccc(c1)CN(c3nc(Oc2cc(c(Cl)cc2)CC)ccn3)CC(O)C(F)(F)F
CACTVS 3.370CCc1cc(Oc2ccnc(n2)N(C[C@@H](O)C(F)(F)F)Cc3cccc(OC(F)(F)C(F)F)c3)ccc1Cl
OpenEye OEToolkits 1.7.6CCc1cc(ccc1Cl)Oc2ccnc(n2)N(Cc3cccc(c3)OC(C(F)F)(F)F)C[C@H](C(F)(F)F)O
CACTVS 3.370CCc1cc(Oc2ccnc(n2)N(C[CH](O)C(F)(F)F)Cc3cccc(OC(F)(F)C(F)F)c3)ccc1Cl
FormulaC24 H21 Cl F7 N3 O3
Name(2R)-3-{[4-(4-chloro-3-ethylphenoxy)pyrimidin-2-yl][3-(1,1,2,2-tetrafluoroethoxy)benzyl]amino}-1,1,1-trifluoropropan-2-ol
ChEMBL
DrugBank
ZINCZINC000098207860
PDB chain4f2a Chain A Residue 610 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4f2a Crystal structures of cholesteryl ester transfer protein in complex with inhibitors.
Resolution3.11 Å
Binding residue
(original residue number in PDB)		C13 V198 Q199 A202 L206 I215 S230 H232 F263 F441
Binding residue
(residue number reindexed from 1)		C9 V194 Q195 A198 L202 I211 S226 H228 F259 F437
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005548 phospholipid transporter activity
GO:0008289 lipid binding
GO:0015485 cholesterol binding
GO:0017129 triglyceride binding
GO:0031210 phosphatidylcholine binding
GO:0120020 cholesterol transfer activity
Biological Process
GO:0006641 triglyceride metabolic process
GO:0006869 lipid transport
GO:0008203 cholesterol metabolic process
GO:0010745 negative regulation of macrophage derived foam cell differentiation
GO:0010874 regulation of cholesterol efflux
GO:0015914 phospholipid transport
GO:0030301 cholesterol transport
GO:0032376 positive regulation of cholesterol transport
GO:0034197 triglyceride transport
GO:0034372 very-low-density lipoprotein particle remodeling
GO:0034374 low-density lipoprotein particle remodeling
GO:0034375 high-density lipoprotein particle remodeling
GO:0042632 cholesterol homeostasis
GO:0043691 reverse cholesterol transport
GO:0046470 phosphatidylcholine metabolic process
GO:0055088 lipid homeostasis
GO:0055091 phospholipid homeostasis
GO:0070328 triglyceride homeostasis
GO:2001140 positive regulation of phospholipid transport
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0031982 vesicle
GO:0034364 high-density lipoprotein particle
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4f2a, PDBe:4f2a, PDBj:4f2a
PDBsum4f2a
PubMed22961980
UniProtP11597|CETP_HUMAN Cholesteryl ester transfer protein (Gene Name=CETP)

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