Structure of PDB 3siw Chain A Binding Site BS04

Receptor Information
>3siw Chain A (length=290) Species: 133505 (Bradyrhizobium sp. WM9) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFS
NAFPAFFEPVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPD
EQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEEAERLIFRNIKLR
SEIRARIDALYEEHFSGHSIIGVHVRHADSELALHQVCMAIRKAKALSYP
KPVKVFLCTDSAQVLDQVSGLFPDVFAVPKAEMGIEGGASALIDMYLLAR
CATVIRFPPTSAFTRYARLLVPRIIEFDNPGHLTMIDNPY
Ligand information
Ligand IDPO4
InChIInChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKeyNBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
SoftwareSMILES
CACTVS 3.341[O-][P]([O-])([O-])=O
ACDLabs 10.04[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0[O-]P(=O)([O-])[O-]
FormulaO4 P
NamePHOSPHATE ION
ChEMBL
DrugBankDB14523
ZINC
PDB chain3siw Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3siw Structures of NodZ alpha-1,6-fucosyltransferase in complex with GDP and GDP-fucose
Resolution1.98 Å
Binding residue
(original residue number in PDB)		R87 W88 Q103 E110
Binding residue
(residue number reindexed from 1)		R86 W87 Q102 E109
Annotation score3
Enzymatic activity
Enzyme Commision number 2.4.1.-
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0016758 hexosyltransferase activity
Biological Process
GO:0009312 oligosaccharide biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:3siw, PDBe:3siw, PDBj:3siw
PDBsum3siw
PubMed22281745
UniProtQ9AQ17

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