Structure of PDB 3o4p Chain A Binding Site BS04

Receptor Information

>3o4p Chain A (length=314) Species: 6622 (Loligo vulgaris)

MEIPVIEPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILR
IDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD
GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE
KFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL
WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE
VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN
GKKQYCETLKFGIF

Ligand information

• Ligand ID: CA
• InChI: InChI=1S/Ca/q+2
• InChIKey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Ca++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Ca+2]
• Formula: Ca
• Name: CALCIUM ION
• DrugBank: DB14577
• PDB chain: 3o4p Chain A Residue 491

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3o4p Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase.
• Resolution: 0.85 Å
• Binding residue (original residue number in PDB): E21 N120 N175 D229
• Binding residue (residue number reindexed from 1): E21 N120 N175 D229
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): E21 E37 N120 N175 D229 H287
• Catalytic site (residue number reindexed from 1): E21 E37 N120 N175 D229 H287
• Enzyme Commision number: 3.8.2.2: diisopropyl-fluorophosphatase.

Gene Ontology

Molecular Function

• GO:0005509 calcium ion binding
• GO:0016787 hydrolase activity
• GO:0046872 metal ion binding
• GO:0047862 diisopropyl-fluorophosphatase activity

Biological Process

• GO:0008150 biological_process

External links

• PDB: RCSB:3o4p, PDBe:3o4p, PDBj:3o4p
• PDBsum: 3o4p
• PubMed: 23915572
• UniProt: Q7SIG4|DFPA_LOLVU Diisopropyl-fluorophosphatase