Structure of PDB 3kv6 Chain A Binding Site BS04

Receptor Information

>3kv6 Chain A (length=447) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHC
PNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFP
SADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDV
ERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSD
TKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFH
IDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKV
DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCY
EMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGV
KALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEEN

Ligand information

Ligand ID

AKG

InChI

InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)

InChIKey

KPGXRSRHYNQIFN-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04	O=C(O)C(=O)CCC(=O)O
OpenEye OEToolkits 1.7.6	C(CC(=O)O)C(=O)C(=O)O
CACTVS 3.385	OC(=O)CCC(=O)C(O)=O

Formula

C5 H6 O5

Name

2-OXOGLUTARIC ACID

PDB chain

3kv6 Chain A Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3kv6 Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.
Resolution	2.89 Å
Binding residue (original residue number in PDB)	I226 Y292 K299 V356
Binding residue (residue number reindexed from 1)	I194 Y260 K267 V324
Annotation score	5

Enzymatic activity

Enzyme Commision number

1.14.11.65: [histone H3]-dimethyl-L-lysine(9) demethylase.

External links

PDB	RCSB:3kv6, PDBe:3kv6, PDBj:3kv6
PDBsum	3kv6
PubMed	20023638
UniProt	Q6ZMT4\|KDM7A_HUMAN Lysine-specific demethylase 7A (Gene Name=KDM7A)

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