Structure of PDB 3k5l Chain A Binding Site BS04

Receptor Information
>3k5l Chain A (length=781) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPHMAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPA
DQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLR
EGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYR
PPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEY
VASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLG
RDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVA
QELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKTE
IMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPH
ASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDP
EHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMN
AFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTD
STFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETH
FCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQ
FQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQR
NVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPL
DYEHYLTRQLQPVAEGILPFIEDNFATLMTG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain3k5l Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3k5l Structural insight into translesion synthesis by DNA Pol II.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		D419 Y420 D547
Binding residue
(residue number reindexed from 1)		D422 Y423 D550
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0008296 3'-5'-DNA exonuclease activity
Biological Process
GO:0006261 DNA-templated DNA replication
GO:0006281 DNA repair
GO:0006974 DNA damage response
GO:0009432 SOS response
GO:0045004 DNA replication proofreading
GO:0071897 DNA biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3k5l, PDBe:3k5l, PDBj:3k5l
PDBsum3k5l
PubMed20064374
UniProtP21189|DPO2_ECOLI DNA polymerase II (Gene Name=polB)

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