Structure of PDB 2b5z Chain A Binding Site BS04

Receptor Information
>2b5z Chain A (length=127) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
NGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDBGS
InChIInChI=1S/C8H16O7S/c1-2-16(13,14)8-7(12)6(11)5(10)4(3-9)15-8/h4-12H,2-3H2,1H3/t4-,5-,6+,7-,8+/m1/s1
InChIKeyOFMOVPVQFRZDRQ-CBQIKETKSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CC[S](=O)(=O)[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0CCS(=O)(=O)C1C(C(C(C(O1)CO)O)O)O
CACTVS 3.341CC[S](=O)(=O)[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O
ACDLabs 10.04O=S(=O)(C1OC(C(O)C(O)C1O)CO)CC
OpenEye OEToolkits 1.5.0CCS(=O)(=O)[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O
FormulaC8 H16 O7 S
Name(1S)-1,5-anhydro-1-(ethylsulfonyl)-D-glucitol;
BETA-D-GLUCOPYRANOSYLSULFONYLETHANE
ChEMBL
DrugBank
ZINCZINC000016051802
PDB chain2b5z Chain A Residue 962 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2b5z Production, crystallization and X-ray characterization of chemically glycosylated hen egg-white lysozyme
Resolution1.6 Å
Binding residue
(original residue number in PDB)		G16 K96
Binding residue
(residue number reindexed from 1)		G16 K96
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) E35 N46 D48 S50 D52 N59
Catalytic site (residue number reindexed from 1) E35 N46 D48 S50 D52 N59
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2b5z, PDBe:2b5z, PDBj:2b5z
PDBsum2b5z
PubMed16511062
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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