Structure of PDB 2axr Chain A Binding Site BS04

Receptor Information
>2axr Chain A (length=479) Species: 5046 (Sarocladium strictum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EAEFNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRST
EDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV
DDNNVATIQGGARLGYTALELLDQGNRALSHGTCPAVGVGGHVLGGGYGF
ATHTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVS
EFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRL
EINANALNWEGNFFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQIN
TYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAIQAFVDYKFDNSSVRP
GRGWWIQWDFHGGKNSALAAVSNDETAYAHRDQLWLWQFYDSIYDYENNT
SPYPESGFEFMQGFVATIEDTLPEDRKGKYFNYADTTLTKEEAQKLYWRG
NLEKLQAIKAKYDPEDVFGNVVSVEPIAY
Ligand information
Ligand IDABL
InChIInChI=1S/C12H21NO10/c14-1-3-10(7(18)8(19)11(21)13-3)23-12-9(20)6(17)5(16)4(2-15)22-12/h3-10,12,14-20H,1-2H2,(H,13,21)/t3-,4-,5-,6+,7-,8-,9-,10-,12+/m1/s1
InChIKeyWXSNJJDPPISYEF-ZNLUKOTNSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C2NC(C(OC1OC(C(O)C(O)C1O)CO)C(O)C2O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@H]([C@@H]([C@H](C(=O)N1)O)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O
CACTVS 3.370OC[C@H]1NC(=O)[C@H](O)[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(=O)N1)O)O)OC2C(C(C(C(O2)CO)O)O)O)O
CACTVS 3.370OC[CH]1NC(=O)[CH](O)[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O
FormulaC12 H21 N O10
Name(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside;
5-amino-5-deoxy-cellobiono-1,5-lactam;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucoside;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl D-glucoside;
(2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl glucoside
ChEMBL
DrugBankDB04096
ZINCZINC000015787448
PDB chain2axr Chain A Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2axr Crystal Structure of Glucooligosaccharide Oxidase from Acremonium strictum: A NOVEL FLAVINYLATION OF 6-S-CYSTEINYL, 8{alpha}-N1-HISTIDYL FAD
Resolution1.98 Å
Binding residue
(original residue number in PDB)
Y72 R245 W351 Q353 Q384 Y429
Binding residue
(residue number reindexed from 1)
Y76 R249 W355 Q357 Q388 Y433
Annotation score2
Enzymatic activity
Enzyme Commision number 1.1.3.-
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
GO:0071949 FAD binding
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Cellular Component
External links
PDB RCSB:2axr, PDBe:2axr, PDBj:2axr
PDBsum2axr
PubMed16154992
UniProtQ6PW77|GOOX_SARSR Glucooligosaccharide oxidase (Gene Name=gluO)

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