Structure of PDB 1rvc Chain A Binding Site BS04
Receptor Information
>1rvc Chain A (length=244) Species:
562
(Escherichia coli) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
SLRSDLINALYDENQKYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPI
INKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENE
KIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLKTY
NINELNEIPKPYKGVKVFLQDKWVIAGDLAGSGNTTNIGSIHAHYKDFVE
GKGIFDSEDEFLDYWRNYERTSQLRNDKYNNISEYRNWIYRGRK
Ligand information
>1rvc Chain F (length=5) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
atctt
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1rvc
Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution.
Resolution
2.1 Å
Binding residue
(original residue number in PDB)
K38 Q68 Q69 N70
Binding residue
(residue number reindexed from 1)
K37 Q67 Q68 N69
Enzymatic activity
Enzyme Commision number
3.1.21.4
: type II site-specific deoxyribonuclease.
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0004519
endonuclease activity
GO:0009036
type II site-specific deoxyribonuclease activity
GO:0046872
metal ion binding
Biological Process
GO:0009307
DNA restriction-modification system
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1rvc
,
PDBe:1rvc
,
PDBj:1rvc
PDBsum
1rvc
PubMed
7819264
UniProt
P04390
|T2E5_ECOLX Type II restriction enzyme EcoRV (Gene Name=ecoRVR)
[
Back to BioLiP
]