Structure of PDB 1rmg Chain A Binding Site BS04

Receptor Information
>1rmg Chain A (length=422) Species: 5053 (Aspergillus aculeatus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QLSGSVGPLTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWAACKSG
GLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYRTGTASGNMIAVTDTTD
FELFSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAPA
FHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWGSNIWVHDVEVTNKDECV
TVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIVYRNVYTWSSNQMY
MIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNI
TVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLC
RSAYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS
IPIPTIPTSFYPGLTPYSALAG
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain1rmg Chain A Residue 432 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1rmg The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel beta helix.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		T372 T374
Binding residue
(residue number reindexed from 1)		T372 T374
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.171: rhamnogalacturonan hydrolase.
Gene Ontology
Molecular Function
GO:0004650 polygalacturonase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046576 rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0005975 carbohydrate metabolic process
GO:0071555 cell wall organization
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1rmg, PDBe:1rmg, PDBj:1rmg
PDBsum1rmg
PubMed9115442
UniProtQ00001|RHGA_ASPAC Rhamnogalacturonase A (Gene Name=rhgA)

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