Structure of PDB 1mm8 Chain A Binding Site BS04

Receptor Information

>1mm8 Chain A (length=455) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSK
AAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYR
HQVAEELGKLGSIQDKSRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDP
ADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHN
ERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRK
NRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSE
PVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVS
ILSFVAVRLLQLRESFTPQSAETVLTPDECQLLGYLDKGKRKRKEKAGSL
QWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQ
GIKIG

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

1mm8 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	1mm8 Evidence for "unseen" Transposase--DNA contacts
Resolution	2.8 Å
Binding residue (original residue number in PDB)	D97 D188
Binding residue (residue number reindexed from 1)	D93 D184
Annotation score	4

Enzymatic activity

Enzyme Commision number

3.1.-.-

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0004519	endonuclease activity
GO:0004803	transposase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006310	DNA recombination
GO:0006313	DNA transposition
GO:0032196	transposition

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:1mm8, PDBe:1mm8, PDBj:1mm8
PDBsum	1mm8
PubMed	12367522
UniProt	Q46731\|TN5P_ECOLX Transposase for transposon Tn5 (Gene Name=tnpA)

[Back to BioLiP]