Structure of PDB 1h4q Chain A Binding Site BS04

Receptor Information
>1h4q Chain A (length=465) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVL
DRMFKETGHQNAYFPLFIPMSFLRFSPELAVVTHAGGEELEEPLAVRPTS
ETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGH
TAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTT
TIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS
WRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLR
QALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVL
ASRLGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEA
FKEAVQEGFALAFHCGDKACERLIQEETTATTRCVPFEAEPEEGFCVRCG
RPSAYGKRVVFAKAY
Ligand information
Ligand IDPRI
InChIInChI=1S/C5H9NO/c7-4-5-2-1-3-6-5/h4-6H,1-3H2/t5-/m0/s1
InChIKeyJIDDDPVQQUHACU-YFKPBYRVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1CC(NC1)C=O
CACTVS 3.341O=C[CH]1CCCN1
OpenEye OEToolkits 1.5.0C1C[C@H](NC1)C=O
ACDLabs 10.04O=CC1NCCC1
CACTVS 3.341O=C[C@@H]1CCCN1
FormulaC5 H9 N O
NamePYRROLIDINE-2-CARBALDEHYDE;
PROLINOL
ChEMBL
DrugBank
ZINCZINC000005849612
PDB chain1h4q Chain A Residue 1480 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1h4q A Succession of Substrate Induced Conformational Changes Ensures the Amino Acid Specificity of Thermus Thermophilus Prolyl-tRNA Synthetase: Comparison with Histidyl-tRNA Synthetase
Resolution3.0 Å
Binding residue
(original residue number in PDB)		T111 E113 W158 H230 S258 W259 G260
Binding residue
(residue number reindexed from 1)		T99 E101 W146 H218 S246 W247 G248
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) E113 R142 H162
Catalytic site (residue number reindexed from 1) E101 R130 H150
Enzyme Commision number 6.1.1.15: proline--tRNA ligase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004827 proline-tRNA ligase activity
GO:0005524 ATP binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0006418 tRNA aminoacylation for protein translation
GO:0006433 prolyl-tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm
GO:0017101 aminoacyl-tRNA synthetase multienzyme complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1h4q, PDBe:1h4q, PDBj:1h4q
PDBsum1h4q
PubMed11399074
UniProtQ5SM28|SYP_THET8 Proline--tRNA ligase (Gene Name=proS)

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