Structure of PDB 7pt7 Chain 8 Binding Site BS04

Receptor Information
>7pt7 Chain 8 (length=402) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DIPPEIKEEMIQLYHDLPGIENEYKLIDKIGEGTFSSVYKAKDITGKITK
KFASHFWNYGSNYVALKKIYVTSSPQRIYNELNLLYIMTGSSRVAPLCDA
KRVRDQVIAVLPYYPHEEFRTFYRDLPIKGIKKYIWELLRALKFVHSKGI
IHRDIKPTNFLFNLELGRGVLVDFGLAEAQMDYKSNHEQFCPCIMRNQYS
VNGVDLTKGYPKNETRRIKRANRAGTRGFRAPEVLMKCGAQSTKIDIWSV
GVILLSLLGRRFPMFQSLDDADSLLELCTIFGWKELRKCAALHGLGFEAS
GLIWDKPNGYSNGLKEFVYDLLNKECTIGTFPEYSVAFETFGFLQQELHD
DAYELKKYQEEIWSDHYWCFQVLEQCFEMDPQKRSSAEDLLKTPFFNELN
EN
Ligand information
Ligand IDBEF
InChIInChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
InChIKeyOGIAHMCCNXDTIE-UHFFFAOYSA-K
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[Be-](F)(F)F
ACDLabs 10.04
CACTVS 3.341		F[Be-](F)F
FormulaBe F3
NameBERYLLIUM TRIFLUORIDE ION
ChEMBL
DrugBank
ZINC
PDB chain7pt7 Chain 8 Residue 1003 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pt7 The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		D163 N168 D182
Binding residue
(residue number reindexed from 1)		D154 N159 D173
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0042802 identical protein binding
GO:0044024 histone H2AS1 kinase activity
GO:0046872 metal ion binding
GO:0106310 protein serine kinase activity
Biological Process
GO:0000727 double-strand break repair via break-induced replication
GO:0001100 negative regulation of exit from mitosis
GO:0006270 DNA replication initiation
GO:0006279 premeiotic DNA replication
GO:0006338 chromatin remodeling
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0016310 phosphorylation
GO:0031503 protein-containing complex localization
GO:0033314 mitotic DNA replication checkpoint signaling
GO:0051301 cell division
GO:0051321 meiotic cell cycle
GO:0060903 positive regulation of meiosis I
GO:1902977 mitotic DNA replication preinitiation complex assembly
GO:1903343 positive regulation of meiotic DNA double-strand break formation
GO:1904968 positive regulation of spindle attachment to meiosis I kinetochore
GO:1905263 positive regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination
GO:1905342 positive regulation of protein localization to kinetochore
GO:1905561 positive regulation of kinetochore assembly
Cellular Component
GO:0000775 chromosome, centromeric region
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005813 centrosome
GO:0031431 Dbf4-dependent protein kinase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7pt7, PDBe:7pt7, PDBj:7pt7
PDBsum7pt7
PubMed35614055
UniProtP06243|CDC7_YEAST Cell division control protein 7 (Gene Name=CDC7)

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